rs249090192 SNP Detail

Summary

• ID
  rs249090192
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:91737445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACCCAGT GAGTTTCTCT
  GGCTGGTTTC ATAGACAGTG TCACATTCCC ACCGCCTTTC TGACAGCCTG TGTCTGCCTC
  CCTCCCTTTG TGTGTCTCAG CCATTTGGCT TGTGTTTGGA CCCTGGATCC ACTCTACACT
  AACTACCTGT ACACCTTCAC TTAACCTTCT AATGCCTGGG TTCCTCCTCT GTAATGTATA
  Y
  GGAGTCCTCC CCTGCAGCTA GGGGGATCCC ATCAGTTCTT ACAAAGTGCT CAAAGCCGTG
  CTTGGCATAT AGGCTGTGTG GATGGTGCTG GCCCTCACTC CTCTGCACTG ACACCCAGAG
  GGAACAGCTT CTATCTGCCT TTAGATCTGC AAATTTCCTC TATTCCACAG GCCTGGCCCT
  GTTTCTCTGG ACCCCAGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369190355	MGP_WTSI_6_91710458	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249090192					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369190355	MGP_WTSI_6_91710458	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:91737445 () rs orientation: forward

Symbol	Name	Function Class
Grip2	glutamate receptor interacting protein 2	1045 bp downstream
Rr137562	regulatory region 137562	1956 bp proximal
Rr145245	regulatory region 145245	1914 bp proximal
Rr379752	regulatory region 379752	1279 bp downstream
Slc6a6	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	1401 bp downstream
Tssr57763	transcription start site region 57763	1980 bp downstream
Tssr57764	transcription start site region 57764	1956 bp downstream
Tssr57765	transcription start site region 57765	1923 bp downstream
Tssr57766	transcription start site region 57766	1897 bp downstream
Tssr57767	transcription start site region 57767	1826 bp downstream
Tssr57768	transcription start site region 57768	1816 bp downstream
Tssr57769	transcription start site region 57769	1616 bp downstream
Tssr57770	transcription start site region 57770	1505 bp downstream
Tssr62096	transcription start site region 62096	1830 bp upstream
Tssr62097	transcription start site region 62097	1623 bp upstream