rs249092872 SNP Detail

Summary

• ID
  rs249092872
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:65754700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACACAGTT GAATGAATTG
  ACTTGGACAA CTGACCACAG TATAACCATC TTAGTGTTTA TCCTGATGTG TTATCTAGCT
  TGGAAAGGAA ACACTGGAGA CACGCAACAA AGAGAGGCAA GATATATTTG GTTTCATGGG
  CTGAGAGGTT TCGTGGCTCC ATCACTTTCA TGTCTCATGG CAACACAGAG GCACGTTGAT
  R
  TAAAGGTAGA GAAAAGCTGC TCACCTTGGC ATCCAGGAAT CAGAGAAAGA TGAAGAGGGA
  CCTTAATGTC CTTTAAGAGA ATGCTCATTT AATGACTTAC GTTGTCCTAT CAGGCTCTAT
  CTTTTAAGTT CTACCAGCTT CCAATAGTAG CACTGGATAA TGAATATGTC TATGGATGAA
  TCCATTGACT AGGCTAGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321809788	CHEV_6_65727710	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249092872					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:65754700 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm16838	predicted gene, 16838			within coordinates
Prdm5	PR domain containing 5			mRNA-UTR
				Noncoding-Transcript-Variant
Rr631490	regulatory region 631490			782 bp proximal
Rr631491	regulatory region 631491			1523 bp proximal
Tssr56854	transcription start site region 56854			1278 bp upstream
Tssr61222	transcription start site region 61222			1920 bp downstream
Tssr61223	transcription start site region 61223			1973 bp downstream
Tssr61224	transcription start site region 61224			1981 bp downstream
Tssr61225	transcription start site region 61225			1998 bp downstream