rs249092957 SNP Detail

Summary

• ID
  rs249092957
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21422544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGTAACTTC ACACAATTGG
  GAACACGCTG TTTCACACTT TGTTATTGAT TAGCTGAAAT GCCTTAGATG GCAACATTTG
  CAAGCTAAAA GATTCTAAGA CACTTGCTAA GTTCCCTATC ATCAAAACTA TTTGACACTT
  TGTTACTGAT TAACTGAAAT GTCTTAGCCA CTTTTGCAAG CTAAAGGATC CTAGGATAGC
  R
  AGTAAATTGC CTATCGCCAA TTTCAATTCA AAACTTCTAA AGCATGCCTT TCCTTAAAAT
  CCAATCTCTA AAAAAATTAA AGTAGAAACC CTAAGTTTCT AGGCAATTTA AATGGGTTAT
  CCCTGGTGAT CTGTTAAAAA TTGCAAGGAA AACATTCATC TTGACAAGCC AATTCAAGAA
  TTGGCTTGGA AGTTTGAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385303683	MGP_WTSI_12_21378404	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249092957					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385303683	MGP_WTSI_12_21378404	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21422544 () rs orientation: forward

Symbol	Name	Function Class
Adam17	a disintegrin and metallopeptidase domain 17	within coordinates
Cpgi4477	CpG island 4477	644 bp proximal
Gm49586	predicted gene, 49586	1130 bp upstream
Rr463710	regulatory region 463710	1949 bp distal
Rr463711	regulatory region 463711	1562 bp distal
Rr463712	regulatory region 463712	875 bp proximal
Rr463713	regulatory region 463713	986 bp proximal
Rr463714	regulatory region 463714	1000 bp proximal
Rr463715	regulatory region 463715	1141 bp proximal
Rr463716	regulatory region 463716	1180 bp proximal
Rr463717	regulatory region 463717	1668 bp proximal
Tssr112932	transcription start site region 112932	1147 bp upstream
Tssr112933	transcription start site region 112933	1709 bp upstream
Tssr115856	transcription start site region 115856	938 bp downstream
Tssr115857	transcription start site region 115857	958 bp downstream
Tssr115858	transcription start site region 115858	983 bp downstream
Tssr115859	transcription start site region 115859	1007 bp downstream
Tssr115860	transcription start site region 115860	1063 bp downstream