rs249093348 SNP Detail

Summary

• ID
  rs249093348
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:60178754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATTTTTG TTTTTTTAAG
  AATGATTGCT GCCAGGCCGG GCGGTGGTGG CGCACGCCTT TAATCCCAGC ACTCGGGAGG
  CAGAGGCAGG AGGATTTCTG AGTTTCGAGG CCAGCCTGGT CTACAAAGTG AGTTCCAGGA
  CAGCCAGGGC TATACAGAGA AACCCTGTCT CGAGAAACAA ACAAACAAAC AAAACCAAAA
  M
  ACAAACCCAA ACTAACAAAC AAAAAAGAAT GATTGCTGCC ACGGGTAACA TCTGAGGAAG
  CCATCAGGAA GGATTCAGAT AATTATCTGC TTTAAAAAGG AATCTAAACA CAAACAAATA
  ACGCACACAG AACACAGACC TTCCCAGGCT TCTCAGCCCA GAGTTCTGTG TTTGCTTTGG
  TACCCAGCAC AGCCAGCATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388803775	MGP_WTSI_13_60132301	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	C	A	A	A	A	C	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	C	A	C	C	C	A	A	A	A	A	A	A	C	C	A	C	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249093348					SNP	A	A	A	C	A	A	A	A	C	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	C	A	C	C	C	A	A	A	A	A	A	A	C	C	A	C	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388803775	MGP_WTSI_13_60132301	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:60178754 () rs orientation: forward

Symbol	Name	Function Class
A530065N20Rik	RIKEN cDNA A530046M15 gene	within coordinates
Rr284562	regulatory region 284562	555 bp distal
Tssr120109	transcription start site region 120109	1311 bp downstream
Tssr120110	transcription start site region 120110	1247 bp downstream
Tssr120111	transcription start site region 120111	1231 bp downstream