rs249093790 SNP Detail

Summary

• ID
  rs249093790
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46382969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAACT GGTAGTTTGC CTCAGGGGAG
  T
  GACCCAGAAA GTAGGAAGAT TCTAA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325822471	CHEV_19_46469020	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249093790					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46382969 () rs orientation: forward

Symbol	Name	Function Class
Actr1a	ARP1 actin-related protein 1A, centractin alpha	within coordinates
Cpgi11001	CpG island 11001	297 bp proximal
Gm59146	predicted gene, 59146	563 bp upstream
Rr405999	regulatory region 405999	509 bp upstream
Rr406000	regulatory region 406000	1153 bp upstream
Rr548727	regulatory region 548727	73 bp proximal
Rr548728	regulatory region 548728	574 bp proximal
Rr548729	regulatory region 548729	1198 bp proximal
Rr548730	regulatory region 548730	1876 bp proximal
Tssr156751	transcription start site region 156751	823 bp upstream
Tssr156752	transcription start site region 156752	844 bp upstream
Tssr159650	transcription start site region 159650	1192 bp downstream