rs249100127 SNP Detail

Summary

• ID
  rs249100127
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92423478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAAGACCT TCAAAACAGC
  AAGGACTGGC TCAGTCTCAT GATTATTTTT TCCTTTAAAT GTCACACTCC TAATATTTAC
  ACATTTTCCC ACCTGCTTTC AATCTGCTAG CTAGTATTCC TCTTGAATTT ATGCCAATTT
  TACAAAACCT GTGATCATAA ACTTTGAGTA ATTTTAACTT TAAAAAATCA GACTTAGAAC
  R
  AGTATTTCCT TTCTCCTCCC ATTGCAGGAA GATTTAACTA CGAGCTTCTT GAACGCGGTC
  AATTTGATTC TTTCTTCATT TTTAAGCATA CACGGAGTGT GTGAGACAAA GTTGTCAAAA
  CTTTCACCCC TGCACAACTC AGTTTAAATC CTGGGACTAA AAGTGTAAAA ACCAGAGGAC
  AAATGACTTT GCATAGACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323074145	CHEV_9_92436263	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249100127					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92423478 () rs orientation: forward

Symbol	Name	Function Class
B430319G15Rik	RIKEN cDNA B430319G15 gene	within coordinates
Cpgi22147	CpG island 22147	432 bp proximal
Gm37545	predicted gene, 37545	1342 bp upstream
Plod2	procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	798 bp upstream
Rr684632	regulatory region 684632	308 bp proximal
Rr684633	regulatory region 684633	1493 bp proximal
Rr684634	regulatory region 684634	1620 bp proximal
Tssr86520	transcription start site region 86520	830 bp upstream
Tssr86521	transcription start site region 86521	1005 bp upstream