rs249101891 SNP Detail

Summary

• ID
  rs249101891
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:112426357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATTTGTC ATCTGTGTAA
  TTAGACCATT TTTTCTATGT ACGATGGAGG GGAATTCCCA CACTTTAAAT ACAGCAGACC
  TTCCCAGAGC CTTTTAATGA AACGTACGGC ATCTAACCCA CTCGCCGCAC TAGGATTCTG
  CAGCTTCTCA GAGCTTGGTT AGTTTCTTTC TTTCAGCTAC ACTATGAAAT GGTGGCTTGC
  R
  GAAGCCTCAT TAGCAATAGC CATTTCTTCT TTCTTTTTCC CAATTATCGA TGCTTCAAGG
  CAAGGTCACC TCCTCTAGAT CTGGCTTCGT GGCATGGGTA AATGATGTTT GCTCAATGGA
  TTTCTCAAAT AATAACATAG ATTTAGATTC CTGAGGCAGA TAGAGTCTTC TCCAATTCTT
  GCTCAGAGAG GGGGTAAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389995975	MGP_WTSI_13_113080031	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	A	G	G	G	G	A	G	G	G	A	G	A	G	G	G	G	G	G	A	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249101891					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	A	G	G	G	G	A	G	G	G	A	G	A	G	G	G	G	G	G	A	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389995975	MGP_WTSI_13_113080031	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112426357 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ankrd55	ankyrin repeat domain 55			Intron
				Noncoding-Transcript-Variant
Gm55074	predicted gene, 55074			1298 bp upstream
Rr486330	regulatory region 486330			993 bp distal
Rr486331	regulatory region 486331			191 bp distal
Tssr121099	transcription start site region 121099			1316 bp downstream
Tssr121100	transcription start site region 121100			1275 bp downstream
Tssr121101	transcription start site region 121101			1229 bp downstream
Tssr121102	transcription start site region 121102			1017 bp downstream
Tssr124046	transcription start site region 124046			671 bp upstream