rs249103877 SNP Detail

Summary

• ID
  rs249103877
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40503292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTTGAAC TCACGGTCAA
  CATATGAGGC TGCAGAGAAG CCGTATGCAG AAGTGTGTGT AGAGGATCTA GAGTAGCCCG
  TTTCTCTGGG GACAGTGTGC TCTTAGTCTG TACCCTTAGG CTGGGTTGCC AGGTAAACAT
  TTGCTAGTGT TCAGTTCAAA GGCTGAAGCT TGAGCTGAGG GTGATGAGGA ATTCAAACTT
  Y
  CCCTCGCATG CATCCACCCT GTGGTTGCCT GGTTTGCTAA GTCCACCTGC TCTGCTGTAG
  TAGAAGGTTT TGATCTTCTG CAGCTTCATC TACTTCTTAG TGAGTTGCCA AAACTGACCA
  CTGAAAAGCA TGCTGTGTAC ATAACTGTCT CATGTCCCAG AACGTGCAAT CAGGAGGAAG
  TCCTCACTCC CGATAACGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349351176	MGP_WTSI_1_40520977	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249103877					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349351176	MGP_WTSI_1_40520977	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40503292 () rs orientation: forward

Symbol	Name	Function Class
Il1rl1	interleukin 1 receptor-like 1	within coordinates
Il18r1	interleukin 18 receptor 1	1420 bp upstream
Rr16188	regulatory region 16188	1309 bp proximal
Rr29358	regulatory region 29358	1508 bp proximal
Rr371160	regulatory region 371160	1121 bp upstream
Tssr6462	transcription start site region 6462	1883 bp downstream
Tssr6463	transcription start site region 6463	1799 bp downstream
Tssr6464	transcription start site region 6464	1774 bp downstream
Tssr6465	transcription start site region 6465	1509 bp upstream
Tssr6466	transcription start site region 6466	1571 bp upstream
Tssr6467	transcription start site region 6467	1833 bp upstream
Tssr6468	transcription start site region 6468	1844 bp upstream
Tssr6469	transcription start site region 6469	1937 bp upstream
Tssr6470	transcription start site region 6470	1956 bp upstream