rs249105624 SNP Detail

Summary

• ID
  rs249105624
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:33676207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTATGCAC GGGCTGTGCC
  TGAATTAGCC TACAGGGAAG AAATGTCCAA TTACAAAAAG AAGAAATTTG CTATTATCTT
  TTTTTAACAA ACCAATTTAG TAATTAGAAA AGTCTCTGAA CTCACACATT CTTTTCCTCC
  CCTTTTGCTT AAAAAAATAA TTGAAACAAA AACTGTACTT TTCAATAATT CTCTGAAAGA
  S
  GGGGTAACAC AGAGACGTTT GAAATGGGGC TTGGGAACCA CTGTGCATAC GCTCTGGTGC
  TGCCCGGCCT CGCGAGGCAT CTTTAGAGGT GGAGCTGGGA TCACCATGCC TGTGCTTTGG
  TGACACCAGC TCACAGGGTG TCCTCCCATT ATACCTTTGA ATTAGCAGGA CTACTTTATT
  ATGCATATTT CAGCCACATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353584119	MGP_WTSI_2_33641715	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	C	C	C	G	C	C	C	G	C	C	C	C	G	C	G	C	C	G	C	C	C	C	G	C	G	G	G	C	C	G	C	C	C	G	C	C	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249105624					SNP	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	C	C	C	G	C	C	C	G	C	C	C	C	G	C	G	C	C	G	C	C	C	C	G	C	G	G	G	C	C	G	C	C	C	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353584119	MGP_WTSI_2_33641715	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:33676207 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mvb12b	multivesicular body subunit 12B			Intron
				mRNA-UTR
Rr406262	regulatory region 406262			1949 bp proximal
Rr555343	regulatory region 555343			1095 bp distal
Rr555344	regulatory region 555344			within coordinates
Rr555345	regulatory region 555345			1912 bp proximal