rs249107425 SNP Detail

Summary

• ID
  rs249107425
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135775927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAAGCGC GTGGAGAAGG
  ACCTGAATGA GCTACAGACT CTGATCGAGG CTCACTTCGA GAACAGGAAG AAGGAGGAAG
  AGGAGCTGAT TTCCCTCAAA GACAGGATCG TATGTGCCAC TCTGTCACAG TTTGCCCTGT
  CCCCCTTCCC CTGCAGCCCG CCTCAAGCTG CCAACCTGTT GGACACTGCT CTGCTTGGGC
  Y
  CCTGCCACCT GCCTGTCACT GTGGGTGCTC CTTGCCAACA GGAACTGACC CTGATAAGTT
  CTGGCTCTCG CGGAGCCTAA CTAGGCACCA CTGGCTATAG ACCACAGACG AGTCAAATGT
  CTGTGCTCTC CCTGTTCCTG ACCCCATCAG TCAGAGCTGC CTCACTAACG TAGGGAGCAT
  GGGATCAGCT TGTGGAATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351552044	MGP_WTSI_1_137744766	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249107425					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351552044	MGP_WTSI_1_137744766	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135775927 () rs orientation: forward

Symbol	Name	Function Class
Rr12644	regulatory region 12644	327 bp distal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr225	transcription start site region 225	449 bp downstream
Tssr226	transcription start site region 226	179 bp upstream
Tssr227	transcription start site region 227	1251 bp downstream
Tssr9014	transcription start site region 9014	1459 bp downstream
Tssr9015	transcription start site region 9015	453 bp downstream
Tssr9016	transcription start site region 9016	201 bp downstream
Tssr9017	transcription start site region 9017	163 bp downstream
Tssr9018	transcription start site region 9018	145 bp downstream
Tssr9019	transcription start site region 9019	112 bp downstream
Tssr9020	transcription start site region 9020	616 bp upstream
Tssr9021	transcription start site region 9021	668 bp upstream
Tssr9022	transcription start site region 9022	1154 bp upstream
Tssr9023	transcription start site region 9023	1173 bp upstream
Tssr9024	transcription start site region 9024	1267 bp upstream
Tssr9025	transcription start site region 9025	1556 bp upstream
Tssr9026	transcription start site region 9026	1758 bp upstream
Tssr9027	transcription start site region 9027	1868 bp upstream
Tssr9028	transcription start site region 9028	1908 bp upstream
Tssr13890	transcription start site region 13890	414 bp upstream
Tssr13891	transcription start site region 13891	169 bp upstream
Tssr13892	transcription start site region 13892	102 bp upstream
Tssr13893	transcription start site region 13893	85 bp upstream
Tssr13894	transcription start site region 13894	659 bp downstream
Tssr13895	transcription start site region 13895	669 bp downstream
Tssr13896	transcription start site region 13896	1189 bp downstream
Tssr13897	transcription start site region 13897	1260 bp downstream