rs249112885 SNP Detail

Summary

• ID
  rs249112885
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:28685818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGGGCTTC ACGATCTTGG
  CGCTCGAGCT GAACATGGCT TCACCCTGAG GGGAGGAAGG TGCCACCGGT CACCTGGGGC
  GCGGGCCGCC AAAGCCGGGG CCATCTACGG GCGCAAGGCG GATAATCCGC TGCATCCCAC
  CCCGGGGAGC AGGCTCTGCC GCCCCGGACG CCCCCCAAGA GTCTGTTCCC CCAAACTCTG
  Y
  GAAAAACCGC GGCCACATTG CGGCCCGCGA ACCTACCTGA CGGATCGCCG GCTTAGAAAG
  AGGGACGGCT CTCGCGAGAA CGGCTCATAT CCGGGTGGCG GAAGAAAAGA GGTGGGGACA
  GCGGAAGTAG GTGGGTGGAA ACCGGAAGCT CTTCTGAAAA GAGTTGGACC GCCTAGAGTG
  TACCGGAAAA TAGTTCCCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385416040	MGP_WTSI_12_29320684	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249112885					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385416040	MGP_WTSI_12_29320684	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:28685818 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4510	CpG island 4510	within coordinates
Gm53713	predicted gene, 53713	250 bp upstream
Rps7	ribosomal protein S7	within coordinates
Rr255850	regulatory region 255850	1583 bp proximal
Rr265285	regulatory region 265285	within coordinates
Rr369505	regulatory region 369505	within coordinates
Tssr116014	transcription start site region 116014	579 bp upstream
Tssr116015	transcription start site region 116015	13 bp downstream
Tssr116016	transcription start site region 116016	24 bp downstream
Tssr116017	transcription start site region 116017	48 bp downstream
Tssr116018	transcription start site region 116018	72 bp downstream
Tssr116019	transcription start site region 116019	95 bp downstream