rs249115865 SNP Detail

Summary

• ID
  rs249115865
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:37297991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ccTCAGGGA AGTTTTAACG CATGAAGAAG
  TGAAATTCAA AACAGGACCT AGGACCACTC GTTCTTTCAA ACAGCCTCTG GTTGGGGTTC
  AGTCACACCT GTGCTTGAGA ATTGGGGCTG CTCAGCTTTT GGGCATCTTT TTCTAAGGAA
  C
  ACAAATACAT CATCACCTAA CCTTGTAGAG GCCCTTCTTA CTGCTGCTAA GATTTTGGAA
  CGACCATCCA CACTGCCATG CTTAATGGGA ACACACACAT GGAATCACAC CACGTAGCTC
  TAACTCACAC ATCCTCTCAG CTCATCTTGC                                 
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319691064	CHEV_1_37315755	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249115865					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37297991 () rs orientation: forward

Symbol	Name	Function Class
Cnga3	cyclic nucleotide gated channel alpha 3	within coordinates
Gm69908	predicted gene, 69908	1447 bp downstream
Rr409496	regulatory region 409496	256 bp distal