rs249116469 SNP Detail

Summary

• ID
  rs249116469
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100574916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTGGAGA GATGGCTCAG
  TGGTTAAGAG CATTGACTGT TCTTCCAAAG GTCCTGAGTT CAAATCCCAG CAACCACATG
  GTGGCTCACA ACCATCTGTA ATGAGATCTG ATGCCCTCTT CTGGTGTGTC TGAAGACAAC
  TACAGTGTAC TTACATATAA CAATAAATAG ATCTTTGGGC CAGAGAGGGT AGGGCTAGAG
  Y
  GAGCAGAGGT CCTAAATTCA ATTCCCAGCA ACCACATGAT GGCTCATAAC CATCTGTATA
  GCTACAGTGT ACTCATATAC ATAAAATAAA TAAATACATC TTTTTTTTTT TAATTGAACT
  TAAAAAGAAG AGGAGTTTGA GGTGACAGCT CAGTTTAAAG CAAGCACAGA GGCCTGAAAT
  TGATCCTCAG AACCCAGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395181588	MGP_WTSI_15_100507466	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249116469					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395181588	MGP_WTSI_15_100507466	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100574916 () rs orientation: forward

Symbol	Name	Function Class
Cela1	chymotrypsin-like elastase family, member 1	within coordinates
Rr509796	regulatory region 509796	72 bp distal
Rr509797	regulatory region 509797	1607 bp proximal
Rr509798	regulatory region 509798	1817 bp proximal
Tssr4721	transcription start site region 4721	1461 bp upstream
Tssr136468	transcription start site region 136468	1673 bp upstream
Tssr136469	transcription start site region 136469	1633 bp upstream
Tssr136470	transcription start site region 136470	1621 bp upstream
Tssr136471	transcription start site region 136471	1599 bp upstream
Tssr136472	transcription start site region 136472	1588 bp upstream
Tssr136473	transcription start site region 136473	1049 bp downstream
Tssr136474	transcription start site region 136474	1079 bp downstream
Tssr136475	transcription start site region 136475	1138 bp downstream
Tssr136476	transcription start site region 136476	1800 bp downstream