rs249118545 SNP Detail

Summary

• ID
  rs249118545
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53532536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTACTTTgg ggtggagaaa agaaatccct
  gggcttctct gggccagcta ccttagacca cttgaatttc tggccagaga tagcccctgt
  ctcaaaaaag aaggtacatg gctcttgaag aaggacatct aagactgtcc tcaggtcttc
  W
  cacacacaca cacacacaca cacatctgta catacccaaa caaataTCCA ATCTATTTCC
  CAAATGACTC TACCAGTTTT GTAGTTAGAA ACCATAGTCA ATgtctctct accctctcca
  ggatttatcc cttttaaaaa gttttaacca                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324341599	CHEV_13_53473869	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249118545					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53532536 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5620	CpG island 5620	921 bp distal
Rr403780	regulatory region 403780	897 bp downstream
Rr480032	regulatory region 480032	613 bp distal
Sptlc1	serine palmitoyltransferase, long chain base subunit 1	1135 bp upstream
Tssr122583	transcription start site region 122583	1127 bp upstream