rs249121519 SNP Detail

Summary

• ID
  rs249121519
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122641439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTTTCTG TGAGGTCTGT
  ACAGAGCCTA GCATGCAAGG TAATTTTGCC AATATAAAGA GGCTATACGG AGCCCGCCTG
  TGATCCCACG AACAGAAGTG GAAGCCACGG GATCAAGAGT TCAAGGTCAT GGACAGACAC
  TGAAGGAGTT TAGGAGCAGT CTTCCACGTT GGACCTTGTC TAAAACATAC AAAATAAATT
  Y
  AAAAAGCAGA GGAATGTGGG AAGCCATACT TAACAGGGAG GAGGCCCTTT GCATTGAATT
  TGCAAATATC TTCACAAAAT GCGGCTTCAT GAAGGGCATA GATTGCAAAA TAAAGCATTT
  CATCTTCTTG AGTGTTTAGC AACGCCACCC CCCCCCCCCA ATCACTTGAG ACGTCCCACA
  AGGCTCCGCC TCAAGACTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366519189	MGP_WTSI_5_122953385	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249121519					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366519189	MGP_WTSI_5_122953385	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122641439 () rs orientation: forward

Symbol	Name	Function Class
Atp2a2	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	1151 bp upstream
Cpgi16553	CpG island 16553	318 bp distal
Gm57291	predicted gene, 57291	within coordinates
Rr378565	regulatory region 378565	376 bp upstream
Rr399329	regulatory region 399329	77 bp upstream
Rr619901	regulatory region 619901	1874 bp distal
Rr619902	regulatory region 619902	893 bp distal
Rr619903	regulatory region 619903	1177 bp distal
Rr619904	regulatory region 619904	within coordinates
Tssr48698	transcription start site region 48698	1763 bp downstream
Tssr48699	transcription start site region 48699	1641 bp downstream
Tssr48700	transcription start site region 48700	1566 bp downstream
Tssr48701	transcription start site region 48701	894 bp downstream
Tssr53130	transcription start site region 53130	1588 bp upstream
Tssr53131	transcription start site region 53131	1231 bp upstream
Tssr53132	transcription start site region 53132	1200 bp upstream
Tssr53133	transcription start site region 53133	1132 bp upstream
Tssr53134	transcription start site region 53134	1098 bp upstream
Tssr53135	transcription start site region 53135	1082 bp upstream
Tssr53136	transcription start site region 53136	722 bp upstream
Tssr53137	transcription start site region 53137	634 bp upstream