rs249124381 SNP Detail

Summary

• ID
  rs249124381
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101901143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAAACCT GGTCTAAAAA
  AAACAAAACA AACAAACAAA CAAAAAAACA AAAAACAAGC AAACAAACAA ACAAAAGCCC
  AAACAAAAAA AAGAAAAACC TGAAAAAAAA TTGAAAATTA GGCTCAGTGA TAGATAGCAT
  GCTTGCTTAT CATGTGTTTA GGCCTGTACC CCAACACCAC AAGCAATAGC ATGTTTGTTT
  K
  AGAATCAATT GAGGGGCATC GTGGTAGGAA CAGGGTGGAA AGAACATGGG GTAAAAATAG
  ATTGAAAGAC TGGGTTGGCA ACCTGGGATC ACACTCTGTC TCCTGAGCTC TGAATGCCTT
  GGGTTTGCCT CACCTTTGTC CAGGAGGGAG AACTTTCTCA GATATCTGTC TGATGGAATA
  TAGAACTATT CGATCTGAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353677	CHEV_7_109400450	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249124381					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101901143 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	952 bp distal
Rhog	ras homolog family member G	1818 bp upstream
Rr652562	regulatory region 652562	1859 bp distal
Rr652563	regulatory region 652563	1323 bp distal
Rr652564	regulatory region 652564	994 bp distal
Tssr2354	transcription start site region 2354	1660 bp downstream
Tssr68330	transcription start site region 68330	1681 bp downstream
Tssr73943	transcription start site region 73943	1850 bp upstream
Tssr73944	transcription start site region 73944	1813 bp upstream
Tssr73945	transcription start site region 73945	1798 bp upstream
Tssr73946	transcription start site region 73946	1602 bp upstream
Tssr73947	transcription start site region 73947	1457 bp upstream
Tssr73948	transcription start site region 73948	1421 bp upstream
Tssr73949	transcription start site region 73949	1388 bp upstream
Tssr73950	transcription start site region 73950	1341 bp upstream