rs249125814 SNP Detail

Summary

• ID
  rs249125814
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38938374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTTGTTT TGTTTTTGCT
  TTTTTTTTTA AGGGGGGGCA GTTAATGAAA TATATTCAAT AGCTTTGCAG TCAGAAAAAT
  GTAGCAATAG AGACGCCTAA CTCTCTGGTC TACGTCCAGT TCACTCATCA CGCTATAGCT
  GGGGAAAAGG CAGAAATGAA TGTTCTAACT AAACAAAGGA ATTCGCGATG TTTTTAGAAT
  Y
  AGGGCTCTAT TCTTCCTCAG TTTAGGGTAC AGGCAGTTTA CGTCCATAGG ACTTGAATGT
  GTTGTCTTCT CTATCGCTTT TGATTGTTTT CTGACCTCAC ACAAGAAAAG GCAGTAGGAC
  ATCCTTCCAG ATCCTTTTCT TTGCCCCCAT CCCTTGGCAA GAAGGAGGAA TTAGCTCTGT
  AACCAGATCT TCCCAGCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357622673	MGP_WTSI_3_38783147	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249125814					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357622673	MGP_WTSI_3_38783147	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38938374 () rs orientation: forward

Symbol	Name	Function Class
C230034O21Rik	RIKEN cDNA C230034O21 gene	within coordinates
Cpgi13105	CpG island 13105	757 bp proximal
Gm56780	predicted gene, 56780	1464 bp upstream
Gm65329	predicted gene, 65329	441 bp downstream
Rr575715	regulatory region 575715	908 bp distal
Rr575716	regulatory region 575716	1200 bp distal
Rr575717	regulatory region 575717	within coordinates
Rr575718	regulatory region 575718	248 bp proximal
Rr575719	regulatory region 575719	1311 bp proximal
Rr575720	regulatory region 575720	1877 bp proximal
Tssr28930	transcription start site region 28930	1087 bp upstream
Tssr28931	transcription start site region 28931	1458 bp upstream
Tssr28932	transcription start site region 28932	1485 bp upstream
Tssr28933	transcription start site region 28933	1517 bp upstream
Tssr28934	transcription start site region 28934	1618 bp upstream
Tssr28935	transcription start site region 28935	1651 bp upstream
Tssr28936	transcription start site region 28936	1663 bp upstream