rs249138638 SNP Detail

Summary

• ID
  rs249138638
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:76888599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTTCTCGC AGACACCGAA CTCGCCATTA
  CTACCTCTTT TCTAGCTCTC CCTCACTCGC TTGGCCGGAT GAGAAGAGAC AGGCTGGCCG
  GCCCGGGTCC TGACTTCTCT GCCTCAGACA CAGTCCAAAA TAAGTAACAT ATCTGCTCtt
  W
  aaaaaaaaaa aaaaaaaaGC TCCCGTAATT TTGGTGAAAA AAAGAATGTG ATAACATTAA
  ATTCATTTTT AAGCtgtgtg tgtgtgtgcg tgtgcgtgtg cgtgtgtgtg tgtgtgtgtg
  AACAAAACAA TCTATATAGA CTTGAAAACA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323754478	CHEV_11_76811275	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249138638					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:76888599 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3300	CpG island 3300	106 bp distal
Cpgi3301	CpG island 3301	397 bp proximal
Gm72068	predicted gene, 72068	within coordinates
Rr247222	regulatory region 247222	within coordinates
Rr366811	regulatory region 366811	within coordinates
Slc6a4	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	830 bp upstream
Tssr103121	transcription start site region 103121	822 bp upstream