rs249147298 SNP Detail

Summary

• ID
  rs249147298
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:45452447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tgctgggga ccaaactttg caagagtaga
  acatgctttt tacctctgac ccacctttcc agtcccTGAA AAAAAATATA tattttaagt
  ttttatgtgt ttgcctgctt atatgtctgt gcaccatttg tatgcagtgc ctggaggcca
  S
  agtagagcat cagatctcct ggaactggca ttacagatgg ccctgtgcta ctatgtggaa
  agcaaatctg gttatctgga aaagtagcca gtgcttttag ctgtagagcc attgttctaa
  ttccAACTTA AATTTTATTA AACCATTTTT                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323284504	CHEV_10_45296157	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249147298					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:45452447 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1519	CpG island 1519	1292 bp proximal
Gm3805	predicted gene 3805	1133 bp downstream
Hace1	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	1478 bp upstream
Rr224766	regulatory region 224766	1153 bp proximal
Tg(SRY-YFP,Tyr)TashTNpln	transgene insertion TashT, Nicolas Pilon	1478 bp proximal
Tssr93194	transcription start site region 93194	1460 bp upstream
Tssr93195	transcription start site region 93195	1565 bp upstream
Tssr97528	transcription start site region 97528	1749 bp downstream
Tssr97529	transcription start site region 97529	1770 bp downstream