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rs249154364 SNP Detail
Summary
  • ID
    rs249154364
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:6366399 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CGTCCCGGCC TCCCCGCAGG
    CGCACGTGGC TGCGTCCTGT GGGGCCCCGC GAGGCCGGGC GCACGTGCTC CGCGCCTCTC
    CCTTCTCCCA GCCGTTGGGC CCCGCCCTGC TCCGCTGCGG CGCTGCAGCC CCGCGGGCCT
    CTTCCCAGCC TGCTTTCCGG AGCCCCACAG CCTTTTACTC GGATCTGAGC AGGGACCCTG
    Y
    CTAAGGTCTC AGGGGCGAAG GCTCGGAGAG CCCGGACGTG CTCGTTAGCC CGGTTAAACC
    TAGTGGTTTC CTAAACCTAG TGGTTCCTAC GAAGAATATA AAATAATCGT TTTATAGCAG
    ACTTGAGTGT GAATTGAACC TTTGGCCATT TGGTCCGAAG TAGCCACATT TGGTTAGGGA
    GGCTCAAAAT ACCCCTCCGC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss382296447 MGP_WTSI_11_6316402 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs249154364 SNP C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss382296447 MGP_WTSI_11_6316402 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:6366399 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi2558 CpG island 2558 within coordinates
Gm71788 predicted gene, 71788 686 bp upstream
Ppia peptidylprolyl isomerase A within coordinates
Rr246944 regulatory region 246944 within coordinates
Rr402411 regulatory region 402411 321 bp downstream
Tssr100250 transcription start site region 100250 616 bp downstream
Tssr100251 transcription start site region 100251 586 bp downstream
Tssr100252 transcription start site region 100252 532 bp downstream
Tssr100253 transcription start site region 100253 167 bp downstream
Tssr100254 transcription start site region 100254 82 bp downstream
Tssr100255 transcription start site region 100255 54 bp downstream
Tssr106715 transcription start site region 106715 708 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory