rs249154364 SNP Detail

Summary

• ID
  rs249154364
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:6366399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTCCCGGCC TCCCCGCAGG
  CGCACGTGGC TGCGTCCTGT GGGGCCCCGC GAGGCCGGGC GCACGTGCTC CGCGCCTCTC
  CCTTCTCCCA GCCGTTGGGC CCCGCCCTGC TCCGCTGCGG CGCTGCAGCC CCGCGGGCCT
  CTTCCCAGCC TGCTTTCCGG AGCCCCACAG CCTTTTACTC GGATCTGAGC AGGGACCCTG
  Y
  CTAAGGTCTC AGGGGCGAAG GCTCGGAGAG CCCGGACGTG CTCGTTAGCC CGGTTAAACC
  TAGTGGTTTC CTAAACCTAG TGGTTCCTAC GAAGAATATA AAATAATCGT TTTATAGCAG
  ACTTGAGTGT GAATTGAACC TTTGGCCATT TGGTCCGAAG TAGCCACATT TGGTTAGGGA
  GGCTCAAAAT ACCCCTCCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382296447	MGP_WTSI_11_6316402	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249154364					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382296447	MGP_WTSI_11_6316402	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:6366399 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2558	CpG island 2558	within coordinates
Gm71788	predicted gene, 71788	686 bp upstream
Ppia	peptidylprolyl isomerase A	within coordinates
Rr246944	regulatory region 246944	within coordinates
Rr402411	regulatory region 402411	321 bp downstream
Tssr100250	transcription start site region 100250	616 bp downstream
Tssr100251	transcription start site region 100251	586 bp downstream
Tssr100252	transcription start site region 100252	532 bp downstream
Tssr100253	transcription start site region 100253	167 bp downstream
Tssr100254	transcription start site region 100254	82 bp downstream
Tssr100255	transcription start site region 100255	54 bp downstream
Tssr106715	transcription start site region 106715	708 bp upstream