rs249156340 SNP Detail

Summary

• ID
  rs249156340
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:173106498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACCCTGC CCGCCTGCTC
  CTTGGGGTGG TGATTCCCTC TCAGCTCTGT CCTAGCACCT GTGGGTCACA GTGACCCCTT
  TTCCTTCAGT TGCAACCCAA CACCAGACCG TTCCTGTTCT CTCCTGCTCA GAGCCATGGG
  GATCACTGCC CGCTGGCCCG GTGACCCTTC TTGGAAGGGC GTGGCAGAAG GGGAAGGCTT
  Y
  CCAGCCGGCC AAAAGGGATA CACACACACA CACAGAGACC CAGCTGGAGA AGTCTGAGAG
  GCCAGAGGTG GAGAGAGGCC TCAAATCAGA CACACCCCTG ACACCATGAC AGGTGGCTCT
  AAGGCTTGGC TCTGCCTGGG CAAGCTAAGC CCACACTCCA GGATCCCTCA GCCCAAGTTC
  AAATCTGCCT TGCAACTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320622151	CHEV_2_173090206	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249156340					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173106498 () rs orientation: forward

Symbol	Name	Function Class
Pmepa1	prostate transmembrane protein, androgen induced 1	Intron
Rr571915	regulatory region 571915	within coordinates
Rr571916	regulatory region 571916	229 bp proximal
Rr571917	regulatory region 571917	1061 bp proximal
Tssr22050	transcription start site region 22050	345 bp upstream
Tssr27982	transcription start site region 27982	1229 bp downstream