rs249158352 SNP Detail

Summary

• ID
  rs249158352
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84929714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTGGGCC TGGGAATAAT
  AATAATTATC GATCTATTAA TAAAAGTTTT TGAGGCATGA TCTAATGTAA TGTAGTCCAT
  GCTGGCCTGG AACTGGATAA GTAGTCCAGG ATGTCCTTGA ACTGGTCCTT AGGCCTCCAC
  CTCCTGAATG CTAGGCTTAC TTGTGTGCAC CATGATGAAG GGTTTCTGCT TTAAGATGGG
  W
  CCTGCTGACT CCATGCTTCC AGCAAAATAG CCAAGCACTC TCTACCCACA GTCAACTTTG
  GGGGTCGAGA CACAGTCTCA TTTCATAGCC TACCGCGGTC TTGAACACAT GGCAGTCCTC
  CTGGCTCAGC CTCCTGAATG GTAGACTGAC AGAGACGCCT CACAATGCCT GGCTGGTTCC
  TGGAAGTTTT GCGGAGTTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375393412	MGP_WTSI_8_86726984	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249158352					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375393412	MGP_WTSI_8_86726984	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84929714 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20683	CpG island 20683	1231 bp distal
Cpgi20684	CpG island 20684	339 bp proximal
Gm37352	predicted gene, 37352	36 bp downstream
Gm56841	predicted gene, 56841	within coordinates
Gm64130	predicted gene, 64130	1420 bp upstream
Gm65345	predicted gene, 65345	within coordinates
Rr178128	regulatory region 178128	1487 bp proximal
Rr186983	regulatory region 186983	within coordinates
Tssr78375	transcription start site region 78375	1292 bp downstream
Tssr78376	transcription start site region 78376	1203 bp upstream
Tssr82084	transcription start site region 82084	1417 bp upstream
Tssr82085	transcription start site region 82085	1115 bp upstream
Tssr82086	transcription start site region 82086	1093 bp upstream
Tssr82087	transcription start site region 82087	1068 bp upstream
Tssr82088	transcription start site region 82088	398 bp downstream
Tssr82089	transcription start site region 82089	436 bp downstream
Tssr82090	transcription start site region 82090	583 bp downstream
Tssr82091	transcription start site region 82091	1024 bp downstream