rs249163790 SNP Detail

Summary

• ID
  rs249163790
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:56809430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGTCTTTG GTTCCTGTGT
  GAAGGAACTA AAGGTTTATG AGTGCCCCTT CTTCTACCAC TCAGGATTTC AGTCTGGAAA
  AAAAAAAAAA AATCAGACTG GGAAATGTCA CCCTTACTCC ATGGAACCTG TTCTCAATCA
  AACACCTTAA GTTTCTATTG TTTTAAATTA GAAAAGGCCT TCAAAAAAAC TAAACACAGT
  Y
  CCTGTGTCTT CTGGTAGCCT TCCAAAGTCA TACTTACCTA TTACCCTGTA CAAAGGAGAA
  GGAAGGCCTT GGTGCAACAG TACAAGATTA TGGCCTGCCC AAAATCTGCA CATGGGAACA
  TGGGAAGACC AAAAAGGAAC CATAAAAGAA GTAGGCCAAT CATTACTGTT GTTTCATTTG
  TGTAACCATT AATTAACGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325859379	CHEV_19_56895488	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249163790					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:56809430 () rs orientation: forward

Symbol	Name	Function Class
1700010L13Rik	RIKEN cDNA 1700010L13 gene	908 bp upstream
Ccdc186	coiled-coil domain containing 186	Intron
Cpgi11092	CpG island 11092	639 bp proximal
Rr406045	regulatory region 406045	1119 bp upstream
Rr550140	regulatory region 550140	418 bp proximal
Rr550141	regulatory region 550141	919 bp proximal
Rr550142	regulatory region 550142	1182 bp proximal
Tssr157215	transcription start site region 157215	930 bp upstream
Tssr159886	transcription start site region 159886	1082 bp downstream
Tssr159887	transcription start site region 159887	1163 bp downstream