rs249165454 SNP Detail

Summary

• ID
  rs249165454
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165955869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGAGGCT GGCTCCTCAA
  AGCACTTTCT GAAAATAATC CAAATCAGCA CATTTGGAAC GAACTTAACT TTACCTCATA
  GCATCTTGGA GGAAGCCTAG GAAAGGAAAA TACCAATTAT ACAGAACAGG TTGGCCCTCA
  GCCAGGCATG GGGAGAACAC CATGTTTTGA TTAAAGAGAA GTCATGGCTT GAGACCAGCC
  W
  GACAACAAGT TGTACCTTCC CTTCATATCT CTGCCTCACC ATTCATGGCC CTGGTAGTGG
  CCAGTTGCAA CTAGGGAGTA ACGTAAGAAT TCGGAAGACT TGATAAACTC CAAAAGACTC
  ATGACCCACT CTATGGTGGA ACTCATGACA TTCTGCCACC ATCCTTGCAG TCCCCAACTG
  CCCACAGTTA ACCCTCTCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352256760	MGP_WTSI_1_168058431	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249165454					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352256760	MGP_WTSI_1_168058431	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165955869 () rs orientation: forward

Symbol	Name	Function Class
Gpa33	glycoprotein A33 transmembrane	1938 bp upstream
Rr28891	regulatory region 28891	68 bp distal
Rr372394	regulatory region 372394	1134 bp downstream
Styxl2	serine/threonine/tyrosine interacting like 2	402 bp upstream
Tssr9858	transcription start site region 9858	1300 bp downstream
Tssr9859	transcription start site region 9859	1915 bp upstream
Tssr9860	transcription start site region 9860	1947 bp upstream
Tssr14809	transcription start site region 14809	1440 bp upstream
Tssr14810	transcription start site region 14810	1079 bp upstream
Tssr14811	transcription start site region 14811	396 bp upstream
Tssr14812	transcription start site region 14812	380 bp upstream
Tssr14813	transcription start site region 14813	359 bp upstream