rs249172742 SNP Detail

Summary

• ID
  rs249172742
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76300839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCAGCTC ACCCCAGCTC
  ACCCCAGCTC ACTTCTCACT TTGTGTTCCC ATCCTTTTAA AATGTTGTAC AGTATCCTTC
  CTGGGACATG TTTCAGGTCC TGAACTGGCT GCCTTCCTGA GCGCTCAGAG AATAAAGCTT
  TCATTTTTAA GCTTCCTGAG TCTGAAATAA GTTTTCTCGG CTTGTACCTC GAACCCAACA
  R
  TAAGAATCCA GCCCAGTTCC AGCGGCAGAA AAAGCAAAGT CAAGGCAGTG GCTCTGATGT
  ATTCCTCTAC CACCAGGCTC CCGAGGACAT GGCCAAACTC ATTTCTGCAC CAGGGCAAAT
  GGGGAGGGAT GCCAGCCTTG CTGGCATCTA GCTGATGAAC AAAGTAGTCT CTGCTTCAAT
  ACTGATTTGG TCCGCTGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324104742	CHEV_12_77355052	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249172742					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76300839 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	822 bp proximal
Gm47525	predicted gene, 47525	110 bp downstream
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	1233 bp upstream
Rr403350	regulatory region 403350	980 bp upstream
Rr468112	regulatory region 468112	743 bp proximal
Rr468113	regulatory region 468113	1662 bp proximal
Tssr113934	transcription start site region 113934	1144 bp upstream
Tssr113935	transcription start site region 113935	1179 bp upstream
Tssr113936	transcription start site region 113936	1225 bp upstream
Tssr113937	transcription start site region 113937	1267 bp upstream
Tssr113938	transcription start site region 113938	1283 bp upstream
Tssr113939	transcription start site region 113939	1306 bp upstream
Tssr113940	transcription start site region 113940	1388 bp upstream
Tssr113941	transcription start site region 113941	1418 bp upstream
Tssr116711	transcription start site region 116711	981 bp downstream
Tssr116712	transcription start site region 116712	1007 bp downstream