rs249177640 SNP Detail

Summary

• ID
  rs249177640
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:132571019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAGGGCG CGGGGGAGAA
  AGCGGCTGGG AGAAATAAAA AAAAAAAAAA AAAAAAGAAT CCGAAGAAGA ACAAGAAGGG
  AGGGCAGGGG GGAAAAGAGA AAGAAAAAAG GGGGAAGGGG CGGGGAGACG GGGAGGGAGG
  GACGGGGAAG CGAGAGGGCG AAGTGTGGGG CTCCCCTCTG CACCGAGGGT CGGAGATGCC
  W
  GCGAACAGCG CCGAGCAAAG TAATGGCTGA ACACACAGGT CTCCTTTACA GAGGAAAGGG
  GGAAAAAAAT AACTCACCAA GCAGGCAATA AATCAGAATA GCGGAATGCT TTGATCAAGA
  GACTGGGGAA GCCCTCCCCG CGGCCATGCT CTCTCCCCAC CACTGAAATC GCCTTGCTTC
  TCCCTTTCTC TAGAGACCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366765881	MGP_WTSI_5_133018050	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249177640					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366765881	MGP_WTSI_5_133018050	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:132571019 () rs orientation: forward

Symbol	Name	Function Class
Auts2	autism susceptibility candidate 2	within coordinates
Cpgi16710	CpG island 16710	within coordinates
Cpgi16711	CpG island 16711	479 bp proximal
D5Mit324	DNA segment, Chr 5, Massachusetts Institute of Technology 324	1108 bp distal
Rr621808	regulatory region 621808	920 bp distal
Rr621809	regulatory region 621809	within coordinates
Rr621810	regulatory region 621810	467 bp proximal
Rr621811	regulatory region 621811	1154 bp proximal
Rr621812	regulatory region 621812	1765 bp proximal
Tssr53594	transcription start site region 53594	159 bp upstream
Tssr53595	transcription start site region 53595	11 bp downstream
Tssr53596	transcription start site region 53596	195 bp downstream
Tssr53597	transcription start site region 53597	956 bp downstream
Tssr53598	transcription start site region 53598	983 bp downstream
Tssr53599	transcription start site region 53599	1183 bp downstream