rs249184468 SNP Detail

Summary

• ID
  rs249184468
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:112064876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGCCAC CAGGCGCGCC
  CCGGAGCCCA GCCCTTACCT ACCTCGCTGG GGTACCACCT CGAGTCCTAG GGATGTTTGG
  CCAGAGCTTC TGGGTTTCTG GTACTCCGTG CTTACTCTCC GAGGCCAAGT GCAGAAAACA
  GCCCGGGGCA GCAACACCTC ACCCCACCCA AGAAATGATT CTCAGCTTTG AGCTCTCAGA
  Y
  GCCCAGGCTT TAGAGCTGAG AGAGACTACA AGTCCTGCTG CTCAGCGAGA CTGGTCCTCT
  GGATGCAAGA CCGCCCAGAT CAGTGCTGCC TGCCCCACTG GGCGCTGATG CGCTGACTGA
  GAGAAACCTT GCACTGCAGA GCCCAGAGGG GTAGGGCTGG GGCAGGGAGC AGAGTTGACA
  CCTGAAGAAA TAAAAGCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378949010	MGP_WTSI_9_112138312	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249184468					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378949010	MGP_WTSI_9_112138312	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:112064876 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2900079G21Rik	RIKEN cDNA 2900079G21 gene			within coordinates
Arpp21	cyclic AMP-regulated phosphoprotein, 21			mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi22409	CpG island 22409			45 bp distal
Gm68368	predicted gene, 68368			291 bp upstream
Rr687421	regulatory region 687421			1475 bp distal
Rr687422	regulatory region 687422			801 bp distal
Rr687423	regulatory region 687423			within coordinates
Tssr87517	transcription start site region 87517			1557 bp downstream
Tssr87518	transcription start site region 87518			1495 bp downstream
Tssr91805	transcription start site region 91805			1189 bp upstream
Tssr91806	transcription start site region 91806			1164 bp upstream
Tssr91807	transcription start site region 91807			986 bp upstream
Tssr91808	transcription start site region 91808			950 bp upstream
Tssr91809	transcription start site region 91809			905 bp upstream
Tssr91810	transcription start site region 91810			841 bp upstream
Tssr91811	transcription start site region 91811			612 bp upstream
Tssr91812	transcription start site region 91812			306 bp upstream
Tssr91813	transcription start site region 91813			272 bp upstream
Tssr91814	transcription start site region 91814			22 bp downstream
Tssr91815	transcription start site region 91815			46 bp downstream
Tssr91816	transcription start site region 91816			81 bp downstream
Tssr91817	transcription start site region 91817			92 bp downstream
Tssr91818	transcription start site region 91818			111 bp downstream
Tssr91819	transcription start site region 91819			132 bp downstream
Tssr91820	transcription start site region 91820			158 bp downstream