rs249184977 SNP Detail

Summary

• ID
  rs249184977
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:59789761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAACCTA TGGGAGGCTA
  TTGTTAAAGC CAAGTTACAG TGGAACACAG CAGCGTTTTG GAGATGCCAG TACCATGAGA
  TGACCACTAA GAACAGCAGC AGCAGTGGAG TACAGGCAGC TGGAGCCTAG AAGACAAGGT
  GTGTGCTACA AAGGGCATGG CTGGAGAAGT GACCCAAGCC CTTGGAGGAG CCCAGAAGAT
  C
  GTGAGTTGGA TCCCAGACAT TGGACAGTTG GAGTTTAATT TTTGCTTTTG ATTGTGACTG
  TGCCCTGATA TTTTTCCCTC TTGAAGGAAG AAAATATTTT AGGGGATCCC ACAGATAAGA
  GACTTTTAAT TGTAAAAAGA CTTTGGATTT TAAAAGATAC TGGATATTTT AAAAGGATTG
  AACTTTGAAT ATGTAAAGAT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LEWES/EiJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss388794472	MGP_WTSI_13_59743308	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LEWES/EiJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs249184977					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388794472	MGP_WTSI_13_59743308	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:59789761 () rs orientation: forward

Symbol	Name	Function Class
Golm1	golgi membrane protein 1	within coordinates
Tssr4093	transcription start site region 4093	1710 bp upstream
Tssr122874	transcription start site region 122874	1775 bp upstream
Tssr122875	transcription start site region 122875	1758 bp upstream