rs249188279 SNP Detail

Summary

• ID
  rs249188279
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:149561339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGCATAA CTATTTAAAA
  TGGGAGAAGA ACCAACGCTA TCCCAGAGCA GCTGCGTTTT TAAATTTGAA ATATGTTTGT
  TGGCATTCTT TTCATTTTGT GTCTCTGAAA CCTCCACCAC CCCGGCTTTT TTTTAAGTAT
  ATGAAAACTC TTTTTTTTTT TTTTTTTTTT TTTGGTTTTT TCGAGACAGG GTTTCTCTGT
  R
  TAACCCTGGC TGTCCTGGAA CTCACTTTGT AGACCAGGCT GGCCTCGAAC TCAGAAATCT
  GCTTGCCTCT GCCTCCCAAG TGCTGGGATT AAAGGCGTGG GCCACCACCA CCCAGCAGAA
  TATGAGGTTG ACCAGTTTTC CCTTTAGTTT TTTTTTTTTT TTTTTTTTTT TTTTTCCCAT
  GTGGTTGTTG GGATTTGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367160441	MGP_WTSI_5_150440449	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249188279					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367160441	MGP_WTSI_5_150440449	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:149561339 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17098	CpG island 17098	892 bp distal
Gm20005	predicted gene, 20005	858 bp upstream
Hsph1	heat shock 105kDa/110kDa protein 1	1498 bp upstream
Rr399535	regulatory region 399535	1362 bp downstream
Tssr49917	transcription start site region 49917	1419 bp downstream
Tssr49918	transcription start site region 49918	1350 bp downstream
Tssr49919	transcription start site region 49919	1335 bp downstream
Tssr49920	transcription start site region 49920	1033 bp downstream
Tssr54646	transcription start site region 54646	1684 bp upstream
Tssr54647	transcription start site region 54647	1661 bp upstream
Tssr54648	transcription start site region 54648	1621 bp upstream
Tssr54649	transcription start site region 54649	1583 bp upstream
Tssr54650	transcription start site region 54650	1535 bp upstream
Tssr54651	transcription start site region 54651	1179 bp upstream