rs249188542 SNP Detail

Summary

• ID
  rs249188542
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:56283961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTGTGCC CCAAGATCAG
  CTACCGTAGC TCAACTCCCT TGATCAGTGG GATTCTACAG AGCTGGCCTC AAAGTCTGGT
  CTTGCTTTGC TCGTGGAATC GGTTAGCTAC CTCCACCAAG CAAACGTTTG TTGACTACTG
  GCTCCAAGTG GAGACTTACT GATTTAAACA GTTGATACTT TTATTACATA TTAAGGTGGT
  R
  GGGTGGGTGT CAGCCAGAGA AAGGGCAGCA ACATCTATCC ACAAAACTAA AGACTCTCCT
  TCAGGCCCAG GCTACACTAG AATATTAGCA GGTTTTTGGT TTGTGACCCT TTAACAGCTG
  GGCCATCTCT CCAACCCTAG CGCATTTTAT AGACACAAAA AGCATTGTCT AAAGCCCCTG
  GCCCATGCAT TCATTATTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388702017	MGP_WTSI_13_56237509	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249188542					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388702017	MGP_WTSI_13_56237509	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:56283961 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5695	CpG island 5695	103 bp distal
Macroh2a1	macroH2A.1 histone	522 bp upstream
Rr480641	regulatory region 480641	1752 bp distal
Rr480642	regulatory region 480642	629 bp distal
Rr480643	regulatory region 480643	27 bp distal
Tssr122739	transcription start site region 122739	732 bp upstream
Tssr122740	transcription start site region 122740	710 bp upstream
Tssr122741	transcription start site region 122741	640 bp upstream
Tssr122742	transcription start site region 122742	610 bp upstream
Tssr122743	transcription start site region 122743	493 bp upstream
Tssr122744	transcription start site region 122744	480 bp upstream
Tssr122745	transcription start site region 122745	460 bp upstream
Tssr122746	transcription start site region 122746	338 bp upstream
Tssr122747	transcription start site region 122747	300 bp upstream
Tssr122748	transcription start site region 122748	233 bp upstream
Tssr122749	transcription start site region 122749	192 bp upstream
Tssr122750	transcription start site region 122750	61 bp upstream
Tssr122751	transcription start site region 122751	1028 bp downstream