rs249190000 SNP Detail

Summary

• ID
  rs249190000
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75547928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTCCAGC TGAGGTGGTG
  GCCCATGGGG AAACCCTCTC CTAGGACGTG AGCTCTGGCT TGATCCCTAA ACAACTTCTA
  CTTCTGGGAA TTTGGGGTGG ATGGGAGTTG GAGAGATGGC CCCTCCCTGT CTGCAGAATT
  CCCTCTGAAC CGTTTGTCCT CCAAAGCACC TGTAACACGT AGCTGGGATT TGAGGTCACC
  W
  GAACTAACCC ACTCCTGTTC TCTGAAGAGG AAGCAGTCCT GAGAAAGGAG GAGGTTTGTC
  CAAGGTCAAC ACCAGCATTC TTTCTGCCGT TCCTAGGAGC TCCTTGTCAT GTCCCACCTT
  CCTCAACTCA AAATGCCGCT GCCCTGGATT CCATGCAGTC GTTCAGTGTC TGCTGGGCCC
  TTTGTGCTCC TATGGGCTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383902942	MGP_WTSI_11_75470604	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249190000					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383902942	MGP_WTSI_11_75470604	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75547928 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3273	CpG island 3273	515 bp distal
Myo1c	myosin IC	within coordinates
Rr451247	regulatory region 451247	1219 bp distal
Rr451248	regulatory region 451248	within coordinates
Tssr103026	transcription start site region 103026	1327 bp downstream
Tssr103027	transcription start site region 103027	1246 bp downstream
Tssr103028	transcription start site region 103028	1184 bp downstream
Tssr103029	transcription start site region 103029	1165 bp downstream
Tssr103030	transcription start site region 103030	1102 bp downstream
Tssr103031	transcription start site region 103031	1065 bp downstream
Tssr103032	transcription start site region 103032	925 bp downstream