rs249196172 SNP Detail

Summary

• ID
  rs249196172
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56383089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCATGGCT GGAGGAGAGC
  AATGGAGGCA TTTGATGAGA ACTGTGGAAG ACAGGTTTCC AAGAGCTACA GTGAAGAGAG
  GAGTGGAGCA CCTTAAAGAA GGCAGCCAGG ATGTGGGCTG GAGAGATGGC TCAGCGGATA
  AGATCTTCTA GAGGTCCTGA GTTCAATTCC CAGCAACCAC ATGATGACTC CCAATCATCT
  R
  TAATGGGATG CAGTGCCCTC TTCTGGTTTG TCTGAAGGGA GCAACAGTGT ACTCACATAC
  AAATAATTTT TTTTAAGATT TGTTTATTTA TTTATTTATT TATTTATTTA TTTATTTATT
  TATTATATGT ATGTACACTG TAGCTGTCTT CAGACACTCC AGAAGAGGGC ATCAGATTTT
  TGTTAGGGAT GATTGTGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398551215	MGP_WTSI_17_56215512	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249196172					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398551215	MGP_WTSI_17_56215512	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56383089 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9337	CpG island 9337	706 bp distal
Gm65257	predicted gene, 65257	299 bp downstream
Rr528944	regulatory region 528944	1362 bp distal
Rr528945	regulatory region 528945	571 bp distal
Rr528946	regulatory region 528946	995 bp distal
Rr528947	regulatory region 528947	423 bp distal
Rr528948	regulatory region 528948	1577 bp proximal
Rr528949	regulatory region 528949	1945 bp proximal
Tssr145278	transcription start site region 145278	1343 bp downstream
Tssr148737	transcription start site region 148737	1518 bp upstream
Tssr148738	transcription start site region 148738	1479 bp upstream
Tssr148739	transcription start site region 148739	1053 bp upstream
Ubxn6	UBX domain protein 6	1061 bp upstream