rs249196799 SNP Detail

Summary

• ID
  rs249196799
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:89531893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGTACTGA GGGGCCCTCT CTTCCTGACC
  TGTCCCGAGT CACCCTCGCT GAATAGCTGT CTGGTTTCTT TCTGAGGATC CAAATATTCT
  GCACCCTGCA ATCTTGCTGC TGGCTCTAGC CATTGTCTAT ATCCTTTGTG TGTGTGTGTG
  W
  GAGAGAGAGA TTTCAGGAAA GTAACTGTTT CAGTAGAATA AAAAAAACAG ATGAAAATCT
  AGCTTGACAC CAAGTCAGGC CCAGGCAAAT CAGGCTCCTG CCTCTGTTTT TCTACATTGT
  GCTGAGAACC AGGACAGCCT TCAGGTCTGC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319834401	CHEV_1_91500746	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249196799					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:89531893 () rs orientation: forward

Symbol	Name	Function Class
Agap1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	within coordinates
Rr23524	regulatory region 23524	508 bp proximal
Rr35151	regulatory region 35151	within coordinates
Tssr8003	transcription start site region 8003	911 bp downstream