rs249203748 SNP Detail

Summary

• ID
  rs249203748
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24306475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGATTTTG CCGTGTATTG
  GAGAAACCGC AGCATTTGGT TGAAAGGTGG GTTATGAAAG GCACGGCTTA ACGATGGAGA
  CGGTAGATAG GTGTTTGATA GAATTAACTA GATTATAACC TCCAATAGAC CGGTAAGCAG
  GGGAACACCA CTTGGTTGGT TTTTGGTTCC GTGAGTTTTA CTTGGTAGAG AACACATTAT
  R
  GATTCTGGGG ATGTTTGTCA GTTTGTTGAC TCTGAAATCT GTTTTTCAAG AGGACAAAGC
  ACTACAGATA AGCTTGAGTG ATTAAAAAAC CTAATTCGGC TTTCTGACGC TTTTGCTGTG
  AGTATGGGCA GCAGAAGAAT CTTAAGATTT ATTTCGGAAG ATACCAACTC CTGATTTCTT
  AAGGCCAAAC ACTGGTCGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364281813	MGP_WTSI_5_23607295	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249203748					SNP	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364281813	MGP_WTSI_5_23607295	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24306475 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15589	CpG island 15589	155 bp distal
Gm71592	predicted gene, 71592	981 bp upstream
Klhl7	kelch-like 7	within coordinates
Rr377704	regulatory region 377704	1233 bp upstream
Rr398996	regulatory region 398996	745 bp downstream
Rr608239	regulatory region 608239	997 bp distal
Rr608240	regulatory region 608240	844 bp distal
Rr608241	regulatory region 608241	within coordinates
Rr608242	regulatory region 608242	213 bp proximal
Tssr45399	transcription start site region 45399	808 bp downstream
Tssr45400	transcription start site region 45400	779 bp downstream
Tssr50303	transcription start site region 50303	992 bp upstream