rs249206049 SNP Detail

Summary

• ID
  rs249206049
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135775322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTTCCTAA TGGAGGTCAG CACTGCCCCC TTCAGGGATC
  TAGTGAGAGG ACAGATATGA AATTACCTCC GTGAATGTCT GAGCAAGTGA GGTAGACATT
  K
  GTGTGGACAT TATGACAGAG GTGAACATTC CTGCAGGATA AAGTCCCCAG AGGCTCCAGG
  AACGCATAGT CCCTCATGTC CCCAGTTGCT CTGGTGACC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351552027	MGP_WTSI_1_137744161	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	T	G	T	G	G	G	G	G	G	G	G	G	G	G	T	G	T	G	G	G	G	G	T	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249206049					SNP	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	T	G	T	G	G	G	G	G	G	G	G	G	G	G	T	G	T	G	G	G	G	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351552027	MGP_WTSI_1_137744161	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135775322 () rs orientation: forward

Symbol	Name	Function Class
Rr12644	regulatory region 12644	within coordinates
Tnnt2	troponin T2, cardiac	within coordinates
Tssr225	transcription start site region 225	153 bp upstream
Tssr226	transcription start site region 226	422 bp downstream
Tssr227	transcription start site region 227	1856 bp downstream
Tssr9011	transcription start site region 9011	1982 bp downstream
Tssr9012	transcription start site region 9012	1966 bp downstream
Tssr9013	transcription start site region 9013	1680 bp downstream
Tssr9014	transcription start site region 9014	854 bp downstream
Tssr9015	transcription start site region 9015	118 bp upstream
Tssr9016	transcription start site region 9016	389 bp upstream
Tssr9017	transcription start site region 9017	405 bp upstream
Tssr9018	transcription start site region 9018	450 bp upstream
Tssr9019	transcription start site region 9019	475 bp upstream
Tssr9020	transcription start site region 9020	1221 bp upstream
Tssr9021	transcription start site region 9021	1273 bp upstream
Tssr9022	transcription start site region 9022	1759 bp upstream
Tssr9023	transcription start site region 9023	1778 bp upstream
Tssr9024	transcription start site region 9024	1872 bp upstream
Tssr13889	transcription start site region 13889	1977 bp upstream
Tssr13890	transcription start site region 13890	172 bp downstream
Tssr13891	transcription start site region 13891	429 bp downstream
Tssr13892	transcription start site region 13892	469 bp downstream
Tssr13893	transcription start site region 13893	507 bp downstream
Tssr13894	transcription start site region 13894	1264 bp downstream
Tssr13895	transcription start site region 13895	1274 bp downstream
Tssr13896	transcription start site region 13896	1794 bp downstream
Tssr13897	transcription start site region 13897	1865 bp downstream