rs249206968 SNP Detail

Summary

• ID
  rs249206968
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157122315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCAAATC TTAGCACTGG
  GTATGGCTGG CTGCATTGTG CACGTAACCC CAGCATTGGA GGGCAGAGAC CAGCAGATCC
  CAAGAGGTAA CCATCTAGTC TAGCAAAAAT GGTTCTAGAT CAGTGAAAAG GCCCTGCCTC
  AAGGCAAGAA GGCATAGAAC ATCAGAGGAA GTCATCCTGT GTTTACTCTG GCCTCTGCAT
  R
  CCTGTGCACT GGCATACACT TATGTGCATG TACCACAATA CACACAGAAT AGGTAGGGTC
  TTACTATGAA GCTGGGGCTC CAGCTCAGAC TCACCATCTT GCCTCTGTTT CCCTAGTCCT
  GGAGTGACAG GTATGAAATA GTTTACAAAC CATTTCTTGG TTTGTAAAAT GCAGAAAATA
  CCCACCTCAC TTGGATATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356255588	MGP_WTSI_2_157106131	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249206968					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356255588	MGP_WTSI_2_157106131	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157122315 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12571	CpG island 12571	556 bp distal
Mroh8	maestro heat-like repeat family member 8	846 bp upstream
Rpn2	ribophorin II	within coordinates
Rr397441	regulatory region 397441	1346 bp downstream
Rr568459	regulatory region 568459	1239 bp distal
Rr568460	regulatory region 568460	447 bp distal
Tssr21228	transcription start site region 21228	1370 bp downstream
Tssr21229	transcription start site region 21229	1331 bp downstream
Tssr21230	transcription start site region 21230	1265 bp downstream
Tssr21231	transcription start site region 21231	1078 bp downstream
Tssr27165	transcription start site region 27165	877 bp upstream
Tssr27166	transcription start site region 27166	840 bp upstream
Tssr27167	transcription start site region 27167	817 bp upstream