rs249216445 SNP Detail

Summary

• ID
  rs249216445
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:116694086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCAGCCT GGAGTTGGCA
  ATTAGCTGTT TCTGTCTGGG AGGAGGGAAC AGGAGAGCTA GAGGCCAAGC CCTTCCCTAG
  GAGGCTGTTC CAAGAAAGTC ACCCCCCCCT CACCTCACAC CTGCTGGGGG TCCAAAGAGG
  AGACAGGGCA CACGCAGATC TGGGCTAGGG AAGAAGAGTA GAGACGGAGA CAGAGATAGA
  W
  CAAATGTGTT TCTAAATCTC CACTGGTAGC CACTTAGCAA ATGAGTTCCA AGCTCTTTCC
  TTCTGTGTAT AGGTGGGTTG AAAAGATTTC CGAATCTGGT AGATTTGAAC TCTGACCTTC
  TTGGTTCAGA TGGCAGCACG TGGAGACCCT CCTCTGTTCC TTACAAGCAT CCGGGATATG
  AGATGTGAGA AATCACGGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369779794	MGP_WTSI_6_116667143	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	T	T	A	A	A	A	A	A	A	T	T	A	A	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249216445					SNP	A	A	A	A	A	A	A	A	A	A	T	T	A	A	A	A	A	A	A	T	T	A	A	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369779794	MGP_WTSI_6_116667143	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116694086 () rs orientation: forward

Symbol	Name	Function Class
Rr142500	regulatory region 142500	750 bp proximal
Rr145611	regulatory region 145611	85 bp distal
Rr147145	regulatory region 147145	1887 bp distal
Rr147146	regulatory region 147146	1516 bp proximal
Tmem72	transmembrane protein 72	143 bp upstream
Tssr62610	transcription start site region 62610	463 bp upstream
Tssr62611	transcription start site region 62611	391 bp upstream
Tssr62612	transcription start site region 62612	355 bp upstream
Tssr62613	transcription start site region 62613	202 bp upstream