rs249220624 SNP Detail

Summary

• ID
  rs249220624
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69000042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCCACTCT GATGACCCCC TCTTCTCAGA ACTGGATGGA
  TTGGGGCTGG AGCCCATGGA AGAGGGTGGA GGCGAGGGTG GTGGGTGTGG TGTTGGCGGT
  R
  GTGGGGGTGA TGGTGGTGAG GAGGCCCAGA CCCAAATTGG GGCTAAGGGT TCAAGCTCTC
  AGGACTCTGC CATGGAGGAA GAAGAGCAAG GTGGGGGCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323727508	CHEV_11_68922718	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249220624					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69000042 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3105	CpG island 3105	1643 bp proximal
n-TScga3	nuclear encoded tRNA serine 14 (anticodon CGA)	1703 bp upstream
n-TTagt5	nuclear encoded tRNA threonine 5 (anticodon AGT)	1249 bp upstream
Per1	period circadian clock 1	within coordinates
Rr402659	regulatory region 402659	1356 bp upstream
Rr449875	regulatory region 449875	813 bp proximal
Rr449876	regulatory region 449876	1356 bp proximal