rs249224440 SNP Detail

Summary

• ID
  rs249224440
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29779370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAAAGTCT CCCAGAATCC
  AGGGCGGGAA CGTGAGCCTC GTGACAGTCC CCCACGATTG GCTAACAGGG AAGCATAGTT
  GAGAAGATGG CGGCTCAGCA GAGAGAACCT CAGCAGAGCA GGTCCGTATA GAAGCGGCGT
  ACGGTGTGCG GGAGGGCGGC AGGGGCGTGG GGAGTGCGGC CTCTTCCTTC GGTTTGGGGC
  R
  TGTGGGAGAG GGGTACAGTT TGTGGAGTGT GCACAAGTTG TCTGCACTGA GCGGCCGAGG
  CATAGGAATG GCTTTCCAGA AGCCCCAGCC TGTCGCTTGT ACAGACGCCC TCTGCGTCCA
  GCTTCCTCCT GTGTTTCGAG GGGAGCGCGT TAGGGTTCAG GATTCAGGAG GACCAGGGCA
  AAATGGCGGA GGGGACTCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353505608	MGP_WTSI_2_29744878	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249224440					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353505608	MGP_WTSI_2_29744878	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29779370 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11418	CpG island 11418	within coordinates
Gm75149	predicted gene, 75149	within coordinates
Odf2	outer dense fiber of sperm tails 2	within coordinates
Rr396853	regulatory region 396853	217 bp upstream
Rr554173	regulatory region 554173	within coordinates
Rr554174	regulatory region 554174	1245 bp proximal
Rr554175	regulatory region 554175	1318 bp proximal
Tssr452	transcription start site region 452	351 bp upstream
Tssr453	transcription start site region 453	630 bp upstream
Tssr454	transcription start site region 454	647 bp upstream
Tssr455	transcription start site region 455	680 bp upstream
Tssr456	transcription start site region 456	752 bp upstream
Tssr17034	transcription start site region 17034	152 bp downstream
Tssr17035	transcription start site region 17035	115 bp downstream
Tssr17036	transcription start site region 17036	384 bp upstream
Tssr17037	transcription start site region 17037	444 bp upstream
Tssr17038	transcription start site region 17038	708 bp upstream
Tssr17039	transcription start site region 17039	738 bp upstream
Tssr17040	transcription start site region 17040	1088 bp upstream
Tssr17041	transcription start site region 17041	1162 bp upstream
Tssr17042	transcription start site region 17042	1176 bp upstream
Tssr17043	transcription start site region 17043	1197 bp upstream
Tssr17044	transcription start site region 17044	1340 bp upstream
Tssr17045	transcription start site region 17045	1503 bp upstream
Tssr23341	transcription start site region 23341	976 bp downstream