rs249225549 SNP Detail

Summary

• ID
  rs249225549
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:10376874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTT GAGAGTCTTC
  ATATAAAAGC ACAATTAAAG TACAGGGTGG GGTAGACCAG ACGGGACCTT CGATTTTGTT
  TTTAGGGTCC CCCATTCTCC TCACTTCAAA AACTCTTGGA CGGGTAAAGC ACGAGATTAT
  GCTCTAGGTA GACCAGGGGA TTGCAAACCT AGAAAACAAA CAACAGCTGA GAAATTGGGG
  Y
  GTGAGTCCAG TTGTCGGGGC AAATGGGTGT TCGGGTACGC TTGCGGTGTG AACTTTCTAC
  GGATCACTTG TGGAGGGAGT TGAAGGAAAG GAGGGAAGGG AACCGCCCCA GGGGTCCTCG
  TGGCGAGGTC CGTGCTCACT GGGGGAGGTG TCTACCTATG CCTGGGCGGG GGGAGGGGGG
  AGAGGCGGGG GGAGGCGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353068963	MGP_WTSI_2_10293690	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249225549					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353068963	MGP_WTSI_2_10293690	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:10376874 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11193	CpG island 11193	345 bp distal
Cpgi11194	CpG island 11194	121 bp proximal
Cpgi11195	CpG island 11195	1780 bp proximal
Gm74532	predicted gene, 74532	within coordinates
Rr551679	regulatory region 551679	1542 bp distal
Rr551680	regulatory region 551680	1118 bp distal
Rr551681	regulatory region 551681	within coordinates
Rr551682	regulatory region 551682	398 bp proximal
Rr551683	regulatory region 551683	459 bp proximal
Rr551684	regulatory region 551684	600 bp proximal
Sfmbt2	Scm-like with four mbt domains 2	within coordinates
Tssr16083	transcription start site region 16083	1546 bp downstream
Tssr16084	transcription start site region 16084	775 bp downstream
Tssr16085	transcription start site region 16085	708 bp downstream
Tssr16086	transcription start site region 16086	449 bp downstream
Tssr16087	transcription start site region 16087	273 bp upstream
Tssr16088	transcription start site region 16088	363 bp upstream
Tssr16089	transcription start site region 16089	488 bp upstream