rs249227142 SNP Detail

Summary

• ID
  rs249227142
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:111258505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTAAATGCT TTACTCAAAA TAGTTTTTCT
  TTCTTTATTC TTCTTCTTCT TCCTTTAAAA AAAAAAAGTC TACATTTGCT ACCGTCTCTG
  ACTTAAGGGT AATTTGAATT TTCTTTCTTT CTTGGCATAA CTTTTCTTGG TGCTAAAATG
  S
  TGCAAGAAAC AGCATTACCA TGGGTGAATA GAGGAAGCTG GAGGCTTGTA AGGAACTGGC
  CTGGACTGTG TTCTCTGACA CTGCAGAGGT TCTTTTGTTT ATCTGCGTCT GGCATTCTCT
  GTCTGCACTC AGTGTCAGTG GGATGCTCTC                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323196681	CHEV_9_111331941	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249227142					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:111258505 () rs orientation: forward

Symbol	Name	Function Class
Rr192826	regulatory region 192826	905 bp distal
Rr198795	regulatory region 198795	within coordinates
Rr202628	regulatory region 202628	1155 bp distal
Rr202629	regulatory region 202629	1042 bp distal