rs249240442 SNP Detail

Summary

• ID
  rs249240442
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:63219178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACACTGT GTGTACCATA
  GATATAATTA AAAGGAAGAT AAAGAACTGA TGTGTTATTA AAGATTTAGC AATTAGAGTA
  TACTTTTGTG ATTAGTGAAA TAATTCTTTT GCTGTTAGCA GTACATGATA CTATTGATAA
  ACTGTCACTA GATGCCTTCG ATGTCTTTCT GAAAAACTGA ATCTTGGGCT GCTGAGATGA
  Y
  TCTATGATAG CCACTGAGGT TGCTTACTGT TTGGTTCACT CCATAGAGTA AGAGCGAAAC
  TCTAGAAGGT GCTCTGATGG CCACGAGCAC AACACCTGTA CATAAGAGTT TTTGGAAGTG
  TCCTGAAAGG AACATTGTAG GCTCATAAGG TGGTCAAGTG TGGGTTTTCA GAACTCAACC
  TAGAGATGGA GGGAAGTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349860612	MGP_WTSI_1_63226593	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249240442					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349860612	MGP_WTSI_1_63226593	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:63219178 () rs orientation: forward

Symbol	Name	Function Class
Eef1b2	eukaryotic translation elongation factor 1 beta 2	within coordinates
Gm26457	predicted gene, 26457	1265 bp downstream
Gm56065	predicted gene, 56065	1861 bp downstream
Rr17014	regulatory region 17014	623 bp proximal
Rr29527	regulatory region 29527	1177 bp distal
Rr396074	regulatory region 396074	960 bp upstream
Snora41	small nucleolar RNA, H/ACA box 41	884 bp downstream
Tssr7059	transcription start site region 7059	1539 bp downstream
Tssr11884	transcription start site region 11884	1123 bp upstream