rs249243458 SNP Detail

Summary

• ID
  rs249243458
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122558541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGATTTAG AAAGATCTGG
  AAGTTGCAGG GATTAATGCT TTTATTATCT GAAAGAATCT CAAAGCTAAA TTGGGAAGCT
  CTTAATACAG GTCACAGTGA TTCACCAGAG GTTAAAATTT TCATTACTAG GAAAGACACA
  GAATAAAACT GCTTTGATTT ATTTCCTCCC TCCCCTATTT TCTTTTTTGG CTGTTGTTTG
  K
  TTTTGTTTTT GTTTTTTTAC GACAGGTTTT TCTGTGTATC CCTGGCTGTT CTGAAACCCT
  CTCTTTAGAC TAGGCTAGCC TTGAACTCAG ATATTCAGTG ACCTCCCAAG TGCTGTGACT
  AAAGGCATGA GCCACACTGC CCAGCCAAAA CAGCTCTGAT TTCAAGATAG AGACAGAAAT
  ATCATGCCTG GAGGAGAGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322845232	CHEV_8_124355702	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249243458					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122558541 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21206	CpG island 21206	1932 bp distal
Gm24283	predicted gene, 24283	1260 bp downstream
Gm42047	predicted gene, 42047	1336 bp upstream
Gm64252	predicted gene, 64252	1487 bp downstream
Rr401186	regulatory region 401186	802 bp upstream
Rr671930	regulatory region 671930	1519 bp distal
Rr671931	regulatory region 671931	561 bp proximal
Rr671932	regulatory region 671932	921 bp proximal