rs249258513 SNP Detail

Summary

• ID
  rs249258513
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:91075578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATGAAAG TCCGAGGCTT
  CTTTTCCACG ATGCTTTTCA CGATTTTCCC ATCCAGACCA GCCACATAAA TAGAGAGAAA
  TGTTCTTGAG ATTAGAGCCA CCGAGTGGAG GCAGAGCCAC CCCGTTTCAG TGGTCACAAG
  TTTTGGAAAG AGGATTTTCC GAAGTTCTAG TAGCTGTTTG AAAAAAGCTG CATTTAGTCC
  Y
  GGCGCAGGTT TTTTACAGAT GATCTCCGTG CAATGCAGTA TTTCTCTGTT CTCTGCAGGC
  GAGTAAGCTT CTGCTTTTGC CTTCCTGTGG CCAGGCTGCT TTAAACGCTT GCCAATGATG
  GGATAGAGGG TTTTCAGAGC ATATGCCGCA GCCACCAGGC AGGCAGCCCT TTTAGCAGCA
  CCGGATCTGG TCCATTTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394950044	MGP_WTSI_15_91021806	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249258513					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394950044	MGP_WTSI_15_91021806	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:91075578 () rs orientation: forward

Symbol	Name	Function Class
Abcd2	ATP-binding cassette, sub-family D member 2	within coordinates
Rr507988	regulatory region 507988	414 bp proximal
Tssr135946	transcription start site region 135946	381 bp upstream
Tssr135947	transcription start site region 135947	10 bp downstream
Tssr135948	transcription start site region 135948	30 bp downstream
Tssr135949	transcription start site region 135949	65 bp downstream
Tssr135950	transcription start site region 135950	138 bp downstream
Tssr135951	transcription start site region 135951	336 bp downstream
Tssr135952	transcription start site region 135952	358 bp downstream
Tssr135953	transcription start site region 135953	635 bp downstream
Tssr135954	transcription start site region 135954	657 bp downstream