rs249259092 SNP Detail

Summary

• ID
  rs249259092
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107562975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTTCCAG AATCATGAGC
  CAAATGAACT TCCATTTTAT TACAGATCAC GCCACCTCAG GAAACAGCTG AAAATAGAGG
  CGAACCCAGC ATGTTAGTGG GTCAGAAGAC TGTGATGACG TGGGCACAAG CATGCCACGT
  GACTGCGATG ACGTAGCACG CAAGCACACC ACATGGCTGA GATGACAAAG CACGCAGGCA
  Y
  GCCGTGTAGC TGAGGTGACA AAGCATGCCT GCCCCCAATG ATTCATCTTA TTGCTTGTCA
  ACATTGGAAC AGCACCTCGC ACATAAGCCA TGCCACCTTT CGCAGTTAGT GCATCTCTTG
  GTAAGTACTT AGCTCCTCCC AGAACCTTTA AAGATTCCTC CACCCCTCAC CGCCATATAC
  TTCAGTTTCC AAACTTTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321250216	CHEV_4_107378383	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249259092					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107562975 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	within coordinates
Gm57502	predicted gene, 57502	550 bp upstream
Gm70287	predicted gene, 70287	within coordinates
Rr597045	regulatory region 597045	1294 bp distal
Rr597046	regulatory region 597046	1379 bp distal
Tssr38261	transcription start site region 38261	1252 bp upstream
Tssr38262	transcription start site region 38262	1278 bp upstream
Tssr38263	transcription start site region 38263	1288 bp upstream
Tssr38264	transcription start site region 38264	1298 bp upstream
Tssr38265	transcription start site region 38265	1316 bp upstream