rs249260413 SNP Detail

Summary

• ID
  rs249260413
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131456992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTGTCTG TGCATCCCTT
  ATGTTGACTC TTAAGGCTCA ATGCCATGTC CAAACACCCT TCCTCACTGA AGCAAGTCTT
  TAACAGCCAC TTGGAAAGAA GTGTGTAATG ATTCATTTAA AGTGAAATTC ATGGTTAATA
  AAGATAGCAA ACTTGAGCAT TTTAAAACAT AAGGAAGTAA AACTATACAT AGAGCCTCTG
  Y
  ACCCCTTTGA AATATTTTGT GAATTTGCTT AGGTAGTCAT CATTTATTAC CAAGGTAAAT
  GAGGTGTTAT TTTGTTTGTG TAGGTGCACT TGTATAACGA AATAGCAGTA GATAATAAAA
  CCGTAAAACC AAATGTCCCA AAGGTTCTAT GATCCCAATG TTGTTTTAGT TAGATATGCT
  CACGTAAAAA TCTGAAATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351452144	MGP_WTSI_1_133425831	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249260413					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351452144	MGP_WTSI_1_133425831	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131456992 () rs orientation: forward

Symbol	Name	Function Class
Cpgi711	CpG island 711	613 bp distal
Fam72a	family with sequence similarity 72, member A	within coordinates
Gm70877	predicted gene, 70877	1566 bp downstream
Rr396286	regulatory region 396286	1671 bp downstream
Rr396287	regulatory region 396287	1361 bp downstream
Rr418131	regulatory region 418131	1918 bp distal
Rr418132	regulatory region 418132	1341 bp distal
Rr418133	regulatory region 418133	1099 bp distal
Srgap2	SLIT-ROBO Rho GTPase activating protein 2	1902 bp upstream
Tssr8629	transcription start site region 8629	1383 bp downstream
Tssr8630	transcription start site region 8630	1343 bp downstream
Tssr8631	transcription start site region 8631	1252 bp downstream
Tssr8632	transcription start site region 8632	878 bp downstream
Tssr13601	transcription start site region 13601	1961 bp upstream
Tssr13602	transcription start site region 13602	1869 bp upstream
Tssr13603	transcription start site region 13603	1714 bp upstream