rs249260986 SNP Detail

Summary

• ID
  rs249260986
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:100751049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTTTTTT TTCTTTTCTT
  CCTCCCCCTC TTTTATTTTA TTTATTTATT TTTAACAGAT GATAAAACTG AGGCCCTAGT
  TAGGGATTTT CAGAGTTTGG GACTTCCCGG CACCCTCTGG CTGCTCCAGT TCAGCTGTCC
  CAGGACGCTC CTCCCTCATT CCCCACCCAC CCACCCCCGG AGCCGCAGGG GAGCACAGAC
  C
  GGGAGTCCCA GTGTGTGTGT AGGGAGGGGG CACCCCGCTG TAGGGGCTGT CCTCAGCCCA
  GCGCCGCCCA GCCTAGTGGT CGGTCTTGTA AGCGGGGCGC CCTGGCGCAC TCGCCGGGGC
  GCCGGTAATC GAGGGCGGAG GCAAGGAGGG AGCGACCGCT GCTGGGAGGG GTGCTGGGGC
  GAGCTCGCGC GCTGTGTTTG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384467515	MGP_WTSI_11_100721537	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249260986					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384467515	MGP_WTSI_11_100721537	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:100751049 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3835	CpG island 3835	within coordinates
Gm72578	predicted gene, 72578	within coordinates
Rr456792	regulatory region 456792	557 bp distal
Rr456793	regulatory region 456793	within coordinates
Rr456794	regulatory region 456794	73 bp distal
Rr456795	regulatory region 456795	303 bp proximal
Stat5a	signal transducer and activator of transcription 5A	within coordinates
Tssr104969	transcription start site region 104969	740 bp downstream
Tssr104970	transcription start site region 104970	717 bp downstream
Tssr104971	transcription start site region 104971	338 bp downstream
Tssr104972	transcription start site region 104972	107 bp downstream
Tssr104973	transcription start site region 104973	38 bp downstream
Tssr104974	transcription start site region 104974	47 bp upstream
Tssr104975	transcription start site region 104975	69 bp upstream
Tssr104976	transcription start site region 104976	103 bp upstream
Tssr104977	transcription start site region 104977	126 bp upstream
Tssr104978	transcription start site region 104978	195 bp upstream
Tssr104979	transcription start site region 104979	224 bp upstream
Tssr104980	transcription start site region 104980	424 bp upstream
Tssr104981	transcription start site region 104981	1932 bp upstream