rs249261470 SNP Detail

Summary

• ID
  rs249261470
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180827793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGCAATAC ATCCCCACAG
  CAGCCTCCCT TTCTCCTTCT CCCTGACCTT GCCCATCTCC CATCTTCCCC AGATCCATTG
  TTCCTCTCTT TCCCTTCAGA AAAGAGCAGG CATAAGAAGA TGCAATAGAA CTAGGCATAT
  ATCCTTTACT TTCTTTTCAG AGGGAATTTT CACTACAGGA AATAGCTAAT AACCACTGGA
  R
  ATGCCCATGT ACTTGACCAG GACAGTTCAG GGTAAGTCAT AGAATCTGAA GTACATAACA
  CTATGAAGAC AGAAGTCTCA CCCTCCTGGT GTCACCAGGA CGGTCCTTAT CAGTGGCCTT
  ACTCACTTGT ACTGCTGTCA TGTCAACTGC CCCCACCTCT TTTTCATTAC ACCTTACCCA
  TCTCCTTTAT GATCTCTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356774929	MGP_WTSI_2_180920705	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249261470					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356774929	MGP_WTSI_2_180920705	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180827793 () rs orientation: forward

Symbol	Name	Function Class
C330003G01Rik	RIKEN cDNA C330003G01 gene	within coordinates
Cpgi12916	CpG island 12916	784 bp proximal
Gm75115	predicted gene, 75115	within coordinates
Ppdpf	pancreatic progenitor cell differentiation and proliferation factor	1247 bp upstream
Rr374383	regulatory region 374383	1092 bp upstream
Rr572939	regulatory region 572939	757 bp proximal
Rr572940	regulatory region 572940	1276 bp proximal
Rr572941	regulatory region 572941	1347 bp proximal
Rr572942	regulatory region 572942	1703 bp proximal
Tssr22287	transcription start site region 22287	1275 bp upstream
Tssr22288	transcription start site region 22288	1375 bp upstream
Tssr22289	transcription start site region 22289	1509 bp upstream
Tssr22290	transcription start site region 22290	1597 bp upstream
Tssr22291	transcription start site region 22291	1636 bp upstream
Tssr22292	transcription start site region 22292	1779 bp upstream
Tssr22293	transcription start site region 22293	1877 bp upstream