rs249261586 SNP Detail

Summary

• ID
  rs249261586
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80556933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTTGAAA GATGGATGTG
  TAAGTTCGTG GCAAAGCACT GGTTTTTCTT ACTACAGTGT CTAGGTGCGC TAGCCTTGTG
  TTGGTATACC TCTGTCACCA TCCATCTTCC TTGGGCAGTG TGACAGTTGT GAGGCCCTGT
  GCTAAACTAG CCACTCAAAG GGCTTGATCA TGAACTATCA CCAGGGATTT ATTTACAAGG
  Y
  GTATCCTCGG CCGTTTCCCT ATTTGATCTT CACAATCGCA TGAAGTTGGT AATAGCCTCC
  CTTCCCCTCT GGGCCAGATG AGCTTTTCTT AGGAGCCTTT CTCCCCCAAA CAACCCGACT
  TTCCCATTAT CATCCTCTCC TGGGCTTGGC ACTAGAGCCC AAGCAGGCTC AAATGAATGA
  GGAACGCTAT TTTAAGCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394704981	MGP_WTSI_15_80503162	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249261586					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394704981	MGP_WTSI_15_80503162	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80556933 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7376	CpG island 7376	296 bp distal
Fam83f	family with sequence similarity 83, member F	within coordinates
Rr506033	regulatory region 506033	875 bp distal
Rr506034	regulatory region 506034	595 bp distal
Rr506035	regulatory region 506035	151 bp proximal
Rr506036	regulatory region 506036	795 bp proximal
Rr506037	regulatory region 506037	1056 bp proximal
Rr506038	regulatory region 506038	1851 bp proximal
Tssr132233	transcription start site region 132233	1099 bp downstream
Tssr132234	transcription start site region 132234	1086 bp downstream
Tssr132235	transcription start site region 132235	1055 bp downstream
Tssr132236	transcription start site region 132236	1036 bp downstream
Tssr132237	transcription start site region 132237	871 bp downstream