rs249261613 SNP Detail

Summary

• ID
  rs249261613
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4760941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ctcaaaaaa aTTTTATTAA AAAAATCTTT
  AAAAAGAAAA AAGTTGAGAA GACTGCACAT CCCCAGACCA CAGGACTCAC TCGGTCTCCA
  TTAGAGCATC TCAAGAGTCT TTCTCAATAG ATTAAACAGG AAATCAACCT GCTCACCAAG
  R
  CAAaaggctt acatagaagt gaaatgttga tgagtggctc acactttgtt atctgatgtt
  gacattttaa ccttgcagtt taaaaactct ggcctaggtg tgatggcaca cacctttagt
  cgccacgctg gaggcagagg caggcagatc                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323874770	CHEV_12_4717747	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249261613					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4760941 () rs orientation: forward

Symbol	Name	Function Class
Gm53750	predicted gene, 53750	within coordinates
Itsn2	intersectin 2	within coordinates
Rr260648	regulatory region 260648	1141 bp distal
Rr260649	regulatory region 260649	1860 bp proximal
Rr263604	regulatory region 263604	1557 bp distal
Tssr112576	transcription start site region 112576	1395 bp upstream
Tssr112577	transcription start site region 112577	1414 bp upstream
Tssr115645	transcription start site region 115645	1274 bp downstream