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rs249261613 SNP Detail
Summary
  • ID
    rs249261613
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr12:4760941 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                      ctcaaaaaa aTTTTATTAA AAAAATCTTT
    AAAAAGAAAA AAGTTGAGAA GACTGCACAT CCCCAGACCA CAGGACTCAC TCGGTCTCCA
    TTAGAGCATC TCAAGAGTCT TTCTCAATAG ATTAAACAGG AAATCAACCT GCTCACCAAG
    R
    CAAaaggctt acatagaagt gaaatgttga tgagtggctc acactttgtt atctgatgtt
    gacattttaa ccttgcagtt taaaaactct ggcctaggtg tgatggcaca cacctttagt
    cgccacgctg gaggcagagg caggcagatc                                 
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss323874770 CHEV_12_4717747 CHEVERUD SCREENING_POP f SNP A G
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs249261613 SNP A G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:4760941 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm53750 predicted gene, 53750 within coordinates
Itsn2 intersectin 2 within coordinates
Rr260648 regulatory region 260648 1141 bp distal
Rr260649 regulatory region 260649 1860 bp proximal
Rr263604 regulatory region 263604 1557 bp distal
Tssr112576 transcription start site region 112576 1395 bp upstream
Tssr112577 transcription start site region 112577 1414 bp upstream
Tssr115645 transcription start site region 115645 1274 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory